script 1 started
FileManager.getAtomSetCollectionFromFile(fmodel1.pdb)
FileManager opening 1 https://zhanggroup.org/I-TASSER-MTD/output/ITM552669806/fmodel1.pdb
The Resolver thinks Pdb
/jmol//j2s/core/corebio.z.js
-- required by ClazzNode ajax=true async=false
/jmol//j2s/J/render/MeshRenderer.js
-- required by J.renderbio.BioShapeRenderer ajax=true async=false
/jmol//j2s/J/shape/Mesh.js
-- required by J.renderbio.BioShapeRenderer ajax=true async=false
Time for openFile(fmodel1.pdb): 167 ms
reading 2571 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Babel
2571 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Jmol 14.2.13_2015.03.07 2015-03-07 10:45 DSSP analysis for model 1.1 - null
W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637
We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,
and we thank the CMBI for maintaining it to the extent that it was easy to
re-engineer for our purposes. At this point in time, we make no guarantee
that this code gives precisely the same analysis as the code available via license
from CMBI at http://swift.cmbi.ru.nl/gv/dssp
All bioshapes have been deleted and must be regenerated.
null
/jmol//j2s/core/corescriptcmd.z.js
-- required by ClazzNode ajax=true async=false
2571 atoms selected
ambientPercent = 40
16 atoms selected
14 atoms selected
19 atoms selected
11 atoms selected
19 atoms selected
19 atoms selected
16 atoms selected
10 atoms selected
17 atoms selected
12 atoms selected
19 atoms selected
17 atoms selected
24 atoms selected
16 atoms selected
19 atoms selected
7 atoms selected
20 atoms selected
15 atoms selected
14 atoms selected
17 atoms selected
19 atoms selected
14 atoms selected
24 atoms selected
17 atoms selected
19 atoms selected
14 atoms selected
14 atoms selected
12 atoms selected
19 atoms selected
22 atoms selected
17 atoms selected
16 atoms selected
22 atoms selected
22 atoms selected
19 atoms selected
11 atoms selected
14 atoms selected
7 atoms selected
17 atoms selected
14 atoms selected
19 atoms selected
16 atoms selected
17 atoms selected
7 atoms selected
24 atoms selected
22 atoms selected
14 atoms selected
20 atoms selected
15 atoms selected
11 atoms selected
19 atoms selected
7 atoms selected
22 atoms selected
14 atoms selected
19 atoms selected
14 atoms selected
14 atoms selected
24 atoms selected
24 atoms selected
14 atoms selected
16 atoms selected
16 atoms selected
19 atoms selected
14 atoms selected
11 atoms selected
12 atoms selected
14 atoms selected
11 atoms selected
20 atoms selected
14 atoms selected
16 atoms selected
15 atoms selected
7 atoms selected
16 atoms selected
12 atoms selected
16 atoms selected
19 atoms selected
17 atoms selected
11 atoms selected
19 atoms selected
15 atoms selected
12 atoms selected
19 atoms selected
21 atoms selected
17 atoms selected
19 atoms selected
14 atoms selected
7 atoms selected
17 atoms selected
16 atoms selected
20 atoms selected
19 atoms selected
20 atoms selected
7 atoms selected
7 atoms selected
17 atoms selected
14 atoms selected
19 atoms selected
20 atoms selected
15 atoms selected
15 atoms selected
17 atoms selected
19 atoms selected
12 atoms selected
22 atoms selected
16 atoms selected
12 atoms selected
12 atoms selected
17 atoms selected
21 atoms selected
19 atoms selected
14 atoms selected
16 atoms selected
19 atoms selected
15 atoms selected
7 atoms selected
22 atoms selected
20 atoms selected
24 atoms selected
7 atoms selected
12 atoms selected
14 atoms selected
20 atoms selected
20 atoms selected
14 atoms selected
14 atoms selected
21 atoms selected
14 atoms selected
20 atoms selected
15 atoms selected
12 atoms selected
24 atoms selected
15 atoms selected
16 atoms selected
10 atoms selected
11 atoms selected
11 atoms selected
16 atoms selected
15 atoms selected
7 atoms selected
22 atoms selected
19 atoms selected
12 atoms selected
15 atoms selected
22 atoms selected
14 atoms selected
14 atoms selected
19 atoms selected
14 atoms selected
17 atoms selected
14 atoms selected
20 atoms selected
19 atoms selected
17 atoms selected
19 atoms selected
19 atoms selected
24 atoms selected
22 atoms selected
22 atoms selected
Script completed
Jmol script terminated
/jmol//j2s/J/g3d/HermiteRenderer.js
-- required by ClazzNode ajax=true async=false
JSmol exec jmolApplet1 start applet null
Jmol JavaScript applet jmolApplet1__4216187177051474__ initializing
Jmol getValue debug null
Jmol getValue logLevel null
Jmol getValue allowjavascript null
AppletRegistry.checkIn(jmolApplet1__4216187177051474__)
vwrOptions:
{ "name":"jmolApplet1","applet":true,"documentBase":"https://zhanggroup.org/I-TASSER-MTD/output/ITM552669806/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet1__4216187177051474__","codePath":"https:/jmol//j2s/","display":"jmolApplet1_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"4216187177051474","bgcolor":"#000000" }
setting document base to "https://zhanggroup.org/I-TASSER-MTD/output/ITM552669806/"
(C) 2012 Jmol Development
Jmol Version: 14.2.13_2015.03.07 2015-03-07 10:45
java.vendor: Java2Script (HTML5)
java.version: 2015-03-01 07:13:29 (JSmol/j2s)
os.name: Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/131.0.0.0 Safari/537.36
Access: ALL
memory: 0.0/0.0
processors available: 1
useCommandThread: false
appletId:jmolApplet1 (signed)
Jmol getValue emulate null
defaults = "Jmol"
Jmol getValue boxbgcolor null
Jmol getValue bgcolor #000000
backgroundColor = "#000000"
Jmol getValue ANIMFRAMECallback null
Jmol getValue APPLETREADYCallback Jmol._readyCallback
APPLETREADYCallback = "Jmol._readyCallback"
callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY
Jmol getValue ATOMMOVEDCallback null
Jmol getValue CLICKCallback null
Jmol getValue DRAGDROPCallback null
Jmol getValue ECHOCallback null
Jmol getValue ERRORCallback null
Jmol getValue EVALCallback null
Jmol getValue HOVERCallback null
Jmol getValue IMAGECallback null
Jmol getValue LOADSTRUCTCallback null
Jmol getValue MEASURECallback null
Jmol getValue MESSAGECallback null
Jmol getValue MINIMIZATIONCallback null
Jmol getValue SERVICECallback null
Jmol getValue PICKCallback null
Jmol getValue RESIZECallback null
Jmol getValue SCRIPTCallback null
Jmol getValue SYNCCallback null
Jmol getValue STRUCTUREMODIFIEDCallback null
Jmol getValue doTranslate null
language=en_US
Jmol getValue popupMenu null
Jmol getValue script null
Jmol getValue loadInline null
Jmol getValue load null
Jmol applet jmolApplet1__4216187177051474__ ready
umich.edu